Package index • gp3tools

All functions

as_gazepoint_master(): Convert Gazepoint all-gaze data to a master sample table
audit_gazepoint_aoi_coding_matrix(): Audit AOI coding against geometry
audit_gazepoint_aoi_geometry(): Audit AOI geometry definitions
audit_gazepoint_aoi_margin_sensitivity(): Audit AOI margin sensitivity
audit_gazepoint_aoi_overlap(): Audit AOI overlap
audit_gazepoint_aoi_window_denominators(): Audit AOI window denominators before binomial modelling
audit_gazepoint_condition_quality_imbalance(): Audit condition-level quality imbalance
audit_gazepoint_design_balance(): Audit Gazepoint experimental design balance
audit_gazepoint_event_sync(): Audit Gazepoint event and timing synchronisation
audit_gazepoint_exclusion_flow(): Audit Gazepoint exclusion and retention flow
audit_gazepoint_fixation_reliability(): Audit split-half reliability of fixation or AOI metrics
audit_gazepoint_gaze_signal_quality(): Audit Gazepoint gaze-signal quality
audit_gazepoint_master(): Audit a Gazepoint master sample table
audit_gazepoint_post_exclusion_balance(): Audit post-exclusion condition balance
audit_gazepoint_pupil_baseline(): Audit Gazepoint pupil baseline quality
audit_gazepoint_pupil_drift(): Audit Gazepoint pupil drift
audit_gazepoint_pupil_gaps(): Audit Gazepoint pupil interpolation gaps
audit_gazepoint_pupil_imbalance(): Audit Gazepoint pupil preprocessing imbalance
audit_gazepoint_pupil_overlap_risk(): Audit Gazepoint pupil-response overlap risk
audit_gazepoint_pupil_reliability(): Audit split-half reliability for Gazepoint pupil outcomes
audit_gazepoint_screen_bounds(): Audit Gazepoint gaze coordinates against screen bounds
audit_gazepoint_stimulus_luminance(): Audit stimulus luminance and brightness for Gazepoint studies
audit_gazepoint_timecourse_grid(): Audit a Gazepoint time-course grid for cluster-permutation readiness
baseline_correct_gazepoint_pupil(): Baseline-correct Gazepoint pupil data
bootstrap_gazepoint_timecourse(): Bootstrap time-course summaries
check_gazepoint_file_pairs(): Check Gazepoint all-gaze and fixation file pairs
check_gazepoint_model_convergence(): Check model convergence
check_gazepoint_model_overdispersion(): Check model overdispersion
check_gazepoint_model_singularity(): Check model singularity
check_gazepoint_real_data_readiness(): Check real-data readiness before Gazepoint analysis
check_sampling_rate(): Check sampling rate by group
classify_gazepoint_export(): Classify a Gazepoint export
clean_gazepoint_by_trackloss(): Flag or filter Gazepoint data by trackloss
combine_gazepoint_eyes(): Combine left and right Gazepoint eye channels
compare_gazepoint_nested_models(): Compare nested Gazepoint models
compute_gazepoint_aoi_entropy(): Compute AOI entropy metrics
compute_gazepoint_aoi_sequence_metrics(): Compute AOI sequence metrics
compute_gazepoint_aoi_transition_matrix(): Compute Gazepoint AOI transition matrices
compute_gazepoint_saccade_metrics(): Compute basic saccade metrics from fixation coordinates
compute_gazepoint_scanpath_similarity(): Compute AOI scanpath similarity
compute_gazepoint_sequence_complexity(): Compute AOI sequence complexity metrics
compute_gazepoint_sequence_distance(): Compute AOI sequence distance
compute_gazepoint_sequence_recurrence(): Compute simple categorical sequence recurrence metrics
compute_gazepoint_time_varying_transition_matrix(): Compute time-varying Gazepoint transition matrices
compute_gazepoint_transition_network_metrics(): Compute lightweight AOI transition-network metrics
compute_transition_matrix(): Compute an AOI transition matrix
create_gazepoint_analysis_decision_audit(): Create a final Gazepoint analysis-decision audit
create_gazepoint_markovchain_object(): Create a Gazepoint AOI Markov-chain object
create_gazepoint_master(): Create a master long-format dataset from Gazepoint all-gaze data
create_gazepoint_preprocessing_multiverse(): Create a Gazepoint preprocessing multiverse
create_gazepoint_preprocessing_registry(): Create a Gazepoint pupil-preprocessing registry
create_gazepoint_report(): Create a Gazepoint HTML diagnostic report
create_gazepoint_reporting_checklist(): Create a Gazepoint reporting checklist
detect_gazepoint_fixations_ivt(): Detect simple I-VT fixations from gaze samples
diagnose_gazepoint_cluster_design(): Diagnose the design assumptions of a Gazepoint cluster-permutation workflow
diagnose_gazepoint_gamm(): Diagnose GAM and BAM models
diagnose_gazepoint_glmm(): Diagnose GLMM, LMM, and GLM models
estimate_gazepoint_cluster_offset(): Guardrail for exact cluster-offset estimation
estimate_gazepoint_cluster_onset(): Guardrail for exact cluster-onset estimation
estimate_gazepoint_divergence_point(): Estimate a bootstrapped divergence point between two Gazepoint time courses
export_gazepoint_cluster_results(): Export Gazepoint cluster-permutation results
export_gazepoint_heatmap_png(): Export a Gazepoint heatmap plot to PNG
export_gazepoint_master_audit(): Export a Gazepoint master table, audit tables, and validation tables
export_gazepoint_mne_cluster_input(): Export Gazepoint time-course data for MNE-style cluster workflows
export_gazepoint_model_tables(): Export manuscript-ready model tables
export_gazepoint_permuco_cluster_input(): Export Gazepoint time-course data for permuco-style cluster workflows
export_gazepoint_permutes_cluster_input(): Export Gazepoint time-course data for permutes-style cluster workflows
export_gazepoint_tables(): Export Gazepoint analysis tables to CSV files
export_gazepoint_to_bids(): Export Gazepoint data to a lightweight BIDS-style folder
fit_gazepoint_aoi_brms(): Fit an optional Bayesian AOI model with brms
fit_gazepoint_aoi_gamm(): Fit AOI time-course GAMMs
fit_gazepoint_aoi_model_sensitivity(): Fit AOI-window model-family sensitivity checks
fit_gazepoint_aoi_window_glmm(): Fit an AOI-window binomial GLMM
fit_gazepoint_gca(): Fit a Gazepoint Growth Curve Analysis mixed model
fit_gazepoint_pupil_gamm(): Fit a Gazepoint pupil GAMM
fit_gazepoint_pupil_pfe_gamm(): Fit a gaze-position-adjusted pupil GAMM sensitivity model
fit_gazepoint_pupil_window_lmm(): Fit confirmatory pupil-window linear mixed models
fit_gazepoint_pupil_window_sensitivity(): Run sensitivity models for confirmatory pupil-window analyses
fit_gazepoint_transition_count_nb_sensitivity(): Fit optional negative-binomial transition-count sensitivity models
flag_gazepoint_pupil(): Flag invalid, missing, implausible, and outlying Gazepoint pupil samples
flag_gazepoint_pupil_artifacts(): Flag Gazepoint pupil artifacts before interpolation
flag_gazepoint_pupil_hampel(): Flag pupil artifacts with a Hampel filter
flag_gazepoint_sequence_anomalies(): Flag unusual AOI sequences
flag_tracking_quality(): Flag low-quality Gazepoint recordings
gazepoint_example_aoi_geometry: Example AOI geometry table
gazepoint_example_aoi_windows: Example AOI-window summary table
gazepoint_example_fixations: Example Gazepoint fixation table
gazepoint_example_master: Example Gazepoint master table
gazepoint_example_pupil_windows: Example pupil-window summary table
harmonize_gazepoint_screen_coordinates(): Harmonize Gazepoint screen coordinates across resolutions
inspect_gazepoint_columns(): Inspect Gazepoint columns
interpolate_gazepoint_pupil(): Interpolate short missing gaps in Gazepoint pupil data
interpolate_gazepoint_pupil_pchip(): Interpolate Gazepoint pupil data using PCHIP
launch_gazepoint_qc_dashboard(): Launch or describe a lightweight QC dashboard
plot_gazepoint_aoi_gamm(): Plot AOI time-course GAMM results
plot_gazepoint_aoi_timeline(): Plot an AOI timeline
plot_gazepoint_aoi_transition_matrix(): Plot Gazepoint AOI transition matrix
plot_gazepoint_aoi_verification(): Plot AOI geometry for visual verification
plot_gazepoint_cluster_null_distribution(): Plot the cluster-permutation null distribution
plot_gazepoint_cluster_permutation(): Plot a Gazepoint cluster-permutation result
plot_gazepoint_cluster_results(): Plot cluster-based permutation results
plot_gazepoint_gca(): Plot observed and fitted Growth Curve Analysis trajectories
plot_gazepoint_heatmap(): Plot a Gazepoint gaze or fixation heatmap
plot_gazepoint_heatmap_overlay(): Plot a Gazepoint heatmap over a background image
plot_gazepoint_model_predictions(): Plot observed summaries and model-implied predictions
plot_gazepoint_model_residuals(): Plot model residual diagnostics
plot_gazepoint_multiverse_results(): Plot Gazepoint preprocessing multiverse results
plot_gazepoint_pupil_preprocessing(): Plot Gazepoint pupil preprocessing for one trial
plot_gazepoint_pupil_status(): Plot Gazepoint pupil preprocessing status
plot_gazepoint_pupil_timecourse(): Plot Gazepoint pupil time course
plot_gazepoint_scanpath(): Plot a fixation scanpath
plot_gazepoint_scanpaths(): Plot multiple Gazepoint scanpaths
plot_gazepoint_time_series(): Plot a Gazepoint-style time series
plot_gazepoint_time_varying_effect(): Plot a time-varying effect curve
plot_sampling_rate(): Plot Gazepoint sampling-rate diagnostics
plot_tracking_quality(): Plot Gazepoint tracking-quality diagnostics
plot_transition_heatmap(): Plot an AOI transition heatmap
prepare_gazepoint_aoi_gamm_data(): Prepare AOI time-course data for GAMM analysis
prepare_gazepoint_aoi_glmm_data(): Prepare AOI-window data for binomial GLMMs
prepare_gazepoint_aoi_sequences(): Prepare Gazepoint AOI sequences
prepare_gazepoint_cluster_data(): Prepare time-course data for cluster-based permutation tests
prepare_gazepoint_eyetools_data(): Prepare Gazepoint master data for eyetools-style workflows
prepare_gazepoint_eyetrackingr_data(): Prepare Gazepoint master data for eyetrackingR-style workflows
prepare_gazepoint_fixation_aligned_data(): Prepare fixation- or saccade-contingent aligned Gazepoint data
prepare_gazepoint_gazer_data(): Prepare Gazepoint master data for gazer-style workflows
prepare_gazepoint_gca_data(): Prepare Gazepoint Growth Curve Analysis data
prepare_gazepoint_heatmap_data(): Prepare gaze or fixation coordinates for heatmap plotting
prepare_gazepoint_hmm_data(): Prepare Gazepoint AOI/state sequences for HMM-style workflows
prepare_gazepoint_pupil_gamm_data(): Prepare Gazepoint pupil GAMM data
prepare_gazepoint_pupil_window_model_data(): Prepare pupil-window data for confirmatory mixed models
prepare_gazepoint_pupillometryr_data(): Prepare Gazepoint master data for pupillometryR-style workflows
prepare_gazepoint_semimarkov_data(): Prepare Gazepoint AOI sequences for semi-Markov modelling
prepare_gazepoint_timecourse_test_data(): Prepare time-course data for Gazepoint cluster-permutation testing
prepare_gazepoint_traminer_data(): Prepare AOI sequences for TraMineR-style workflows
read_gazepoint(): Read a Gazepoint all-gaze or fixation CSV export
read_gazepoint_folder(): Read multiple Gazepoint CSV exports from a folder
read_gazepoint_summary(): Read a Gazepoint Analysis Data Summary export
recalibrate_gazepoint_gaze(): Offline gaze recalibration using known target coordinates
recommend_gazepoint_exclusions(): Recommend trial and participant exclusions
report_gazepoint_cluster_permutation(): Report a Gazepoint cluster-permutation result
report_gazepoint_multiverse(): Report multiverse-analysis results
run_gazepoint_aoi_multiverse(): Run a Gazepoint AOI preprocessing multiverse
run_gazepoint_cluster_permutation(): Run paired cluster-based permutation tests
run_gazepoint_cluster_permutation_anova(): Guardrail for cluster-permutation ANOVA
run_gazepoint_cluster_permutation_covariate_adjusted(): Guardrail for covariate-adjusted cluster permutation
run_gazepoint_cluster_permutation_lmer(): Guardrail for mixed-model cluster permutation
run_gazepoint_cluster_permutation_parallel(): Guardrail for parallel cluster permutation
run_gazepoint_cluster_threshold_sensitivity(): Run threshold-sensitivity checks for Gazepoint cluster permutation
run_gazepoint_eyetools_fixation_detection(): Run optional eyetools fixation and saccade detection
run_gazepoint_gazer_crosscheck(): Run an optional gazeR pupil-preprocessing cross-check
run_gazepoint_model_leave_one_out(): Run leave-one-unit model sensitivity analysis
run_gazepoint_multidimensional_cluster_permutation(): Guardrail for multidimensional cluster permutation
run_gazepoint_pupil_multiverse(): Run a Gazepoint pupil preprocessing multiverse
run_gazepoint_tfce(): Guardrail for threshold-free cluster enhancement
run_gazepoint_workflow(): Run a complete Gazepoint analysis workflow
save_gazepoint_plots(): Save standard Gazepoint diagnostic plots
simulate_gazepoint_cluster_timecourse_data(): Simulate simple Gazepoint cluster time-course data
simulate_gazepoint_data(): Simulate simple Gazepoint-style gaze data
simulate_gazepoint_pupil_data(): Simulate Gazepoint-like pupil data
smooth_gazepoint_pupil(): Smooth Gazepoint pupil data
standardise_gazepoint_names(): Standardise Gazepoint column names
summarise_aoi_samples(): Summarise sample-level AOI viewing
summarise_fixations(): Summarise fixation-level AOI metrics
summarise_gazepoint_aoi(): Summarise Gazepoint AOI metrics from gaze and fixation exports
summarise_gazepoint_aoi_entries(): Summarise Gazepoint AOI entry episodes
summarise_gazepoint_aoi_transitions(): Summarise Gazepoint AOI transition features
summarise_gazepoint_aoi_trial_features(): Summarise Gazepoint AOI trial features
summarise_gazepoint_aoi_windows(): Summarise Gazepoint AOI samples within predefined time windows
summarise_gazepoint_clusters(): Summarise cluster-based permutation results
summarise_gazepoint_emmeans(): Summarise estimated marginal means and contrasts
summarise_gazepoint_fixation_trials(): Summarise Gazepoint fixation trial features
summarise_gazepoint_fixed_effects(): Summarise fixed effects from fitted models
summarise_gazepoint_markovchain(): Summarise a Gazepoint Markov-chain object
summarise_gazepoint_multiverse_results(): Summarise Gazepoint preprocessing multiverse results
summarise_gazepoint_pupil(): Summarise Gazepoint pupil data
summarise_gazepoint_pupil_trial_features(): Summarise Gazepoint pupil trial-level features
summarise_gazepoint_pupil_windows(): Summarise Gazepoint pupil responses within time windows
summarise_gazepoint_semimarkov(): Summarise Gazepoint semi-Markov data
summarise_gazepoint_workflow(): Summarise a Gazepoint workflow result
summarise_tracking_quality(): Summarise Gazepoint tracking quality
summarize_gazepoint_time_clusters(): Summarize Gazepoint time clusters
tidy_gazepoint_model_summary(): Create a tidy model summary for manuscript tables
transform_gazepoint_aoi_empirical_logit(): Transform AOI proportions to empirical logits
validate_gazepoint_master(): Validate a Gazepoint master sample table
write_gazepoint_outputs(): Write standard Gazepoint analysis outputs