Plot a first-order transition network — plot_transition_network • gp3sequences

Plot a first-order transition network

Usage

plot_transition_network(
  network,
  weight_col = "weight",
  minimum_weight = 0,
  vertex_cex = 1,
  edge_scale = 5,
  ...
)

Arguments

network: A first-order network from create_transition_network().
weight_col: Edge-weight column.
minimum_weight: Minimum plotted edge weight.
vertex_cex: Vertex label size.
edge_scale: Edge-width multiplier.
...: Additional arguments passed to graphics::plot.window().

Value

The plotted network rows, invisibly.

Examples

data <- data.frame(sequence_id = rep(c("a", "b"), each = 4L),
                   sequence_order = rep(1:4, 2L),
                   state = c("A", "B", "C", "D", "A", "C", "C", "D"))
plot_transition_network(create_transition_network(data, normalise = "from"))