Plot non-contiguous subsequence summaries — plot_sequence_subsequences • gp3sequences

Plot non-contiguous subsequence summaries

Usage

plot_sequence_subsequences(
  x,
  metric = "sequence_prevalence",
  top_n = 10L,
  decreasing = TRUE,
  ...
)

Arguments

x: A summary or group-comparison table.
metric: Numeric column to plot.
top_n: Maximum number of subsequences.
decreasing: Sort metric in decreasing order.
...: Additional arguments passed to graphics::barplot().

Value

The plotted rows, invisibly.

Examples

data <- data.frame(sequence_id = rep(c("a", "b"), each = 4L),
                   sequence_order = rep(1:4, 2L),
                   state = c("A", "B", "C", "D", "A", "C", "B", "D"))
summary <- summarise_sequence_subsequences(extract_sequence_subsequences(data))
plot_sequence_subsequences(summary, top_n = 5L)