Fit a pupil model through the fixed cmdstanr route

Fit a pupil model through the fixed cmdstanr route

Usage

fit_pupil_model_cmdstanr(
  specification,
  chains = 4L,
  iter = 2000L,
  warmup = 1000L,
  cores = min(2L, chains),
  seed = 2026,
  adapt_delta = 0.95,
  max_treedepth = 12L,
  refresh = 0L
)

Arguments

specification

Approved pupil model specification.

chains, iter, warmup, cores, seed

Sampling controls. Package-controlled cores are capped at two.

adapt_delta, max_treedepth, refresh

Fixed safe sampling controls.

Value

A gp3bayes_pupil_fit.

Examples

# See vignette("bayesian-dynamic-pupillometry", package = "gp3bayes") for a complete workflow.