Assess Binary Prior Sensitivity
Source:R/binary-posterior-validation.R
assess_binary_prior_sensitivity.RdRefits the approved binary model under prespecified tighter and wider prior scales and compares population-level posterior medians.
Usage
assess_binary_prior_sensitivity(
fit,
scale_multipliers = c(tighter = 0.5, wider = 2),
chains = fit$sampling$chains,
iter = fit$sampling$iter,
warmup = fit$sampling$warmup,
cores = fit$sampling$cores,
seed = fit$sampling$seed + 1000L,
adapt_delta = fit$sampling$adapt_delta,
max_treedepth = fit$sampling$max_treedepth,
refresh = 0L,
maximum_standardized_shift = 0.25,
review_standardized_shift = 0.5,
retain_fits = FALSE
)Arguments
- fit
A
gp3bayes_binary_fit.- scale_multipliers
Named positive numeric multipliers applied to the intercept, coefficient, and group-scale priors.
- chains, iter, warmup, cores, seed, adapt_delta, max_treedepth, refresh
Restricted sampling controls passed to
fit_binary_model().- maximum_standardized_shift
Maximum absolute posterior-median shift, divided by the reference posterior standard deviation, for a pass.
- review_standardized_shift
Maximum standardized shift for review.
- retain_fits
Whether alternative fitted objects should be retained.